[INFO] cloning repository https://github.com/fuyu-myk/pixelfold
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[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] bd8b2c283d7b25b0af218017ae35eed9185a02d7
[INFO] testing fuyu-myk/pixelfold against master#1f7f8ea0721a3b1eb73e6c6d25cccb371434b320 for pr-154065
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffuyu-myk%2Fpixelfold" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
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[INFO] finished tweaking git repo https://github.com/fuyu-myk/pixelfold
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[INFO] validating manifest of git repo https://github.com/fuyu-myk/pixelfold on toolchain 1f7f8ea0721a3b1eb73e6c6d25cccb371434b320
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[INFO] crate git repo https://github.com/fuyu-myk/pixelfold already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "start" "-a" "a9299ceace846910b30e0b021a2bd535da6b3f6ae36698cec1324e333c6296c9", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 82abc520cbafcaa5df9da7e2615372a0ca9777e3e7ffd238d69a29c74c3e8d50
[INFO] running `Command { std: "docker" "start" "-a" "82abc520cbafcaa5df9da7e2615372a0ca9777e3e7ffd238d69a29c74c3e8d50", kill_on_drop: false }`
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[INFO] [stderr]    Compiling h2 v0.4.13
[INFO] [stderr]    Compiling rustls-webpki v0.103.8
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[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling hyper-util v0.1.19
[INFO] [stderr]    Compiling tokio-rustls v0.26.4
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[INFO] [stderr]    Compiling pixelfold v0.5.3 (/opt/rustwide/workdir)
[INFO] [stdout] warning: fields `hbond_distance_threshold` and `hbond_energy_threshold` are never read
[INFO] [stdout]    --> src/lib.rs:166:5
[INFO] [stdout]     |
[INFO] [stdout] 165 | pub struct SecondaryStructureAssignment {
[INFO] [stdout]     |            ---------------------------- fields in this struct
[INFO] [stdout] 166 |     hbond_distance_threshold: f32, // in Å
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 167 |     hbond_energy_threshold: f32,   // in kcal/mol
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 56s
[INFO] running `Command { std: "docker" "inspect" "82abc520cbafcaa5df9da7e2615372a0ca9777e3e7ffd238d69a29c74c3e8d50", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "82abc520cbafcaa5df9da7e2615372a0ca9777e3e7ffd238d69a29c74c3e8d50", kill_on_drop: false }`
[INFO] [stdout] 82abc520cbafcaa5df9da7e2615372a0ca9777e3e7ffd238d69a29c74c3e8d50
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4c009c55b795c386539403faf8c50497d734be03e86b514f6e1e8bd46fab0808
[INFO] running `Command { std: "docker" "start" "-a" "4c009c55b795c386539403faf8c50497d734be03e86b514f6e1e8bd46fab0808", kill_on_drop: false }`
[INFO] [stdout] warning: fields `hbond_distance_threshold` and `hbond_energy_threshold` are never read
[INFO] [stdout]    --> src/lib.rs:166:5
[INFO] [stdout]     |
[INFO] [stdout] 165 | pub struct SecondaryStructureAssignment {
[INFO] [stdout]     |            ---------------------------- fields in this struct
[INFO] [stdout] 166 |     hbond_distance_threshold: f32, // in Å
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 167 |     hbond_energy_threshold: f32,   // in kcal/mol
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling pixelfold v0.5.3 (/opt/rustwide/workdir)
[INFO] [stdout] warning: fields `hbond_distance_threshold` and `hbond_energy_threshold` are never read
[INFO] [stdout]    --> src/lib.rs:166:5
[INFO] [stdout]     |
[INFO] [stdout] 165 | pub struct SecondaryStructureAssignment {
[INFO] [stdout]     |            ---------------------------- fields in this struct
[INFO] [stdout] 166 |     hbond_distance_threshold: f32, // in Å
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 167 |     hbond_energy_threshold: f32,   // in kcal/mol
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.74s
[INFO] running `Command { std: "docker" "inspect" "4c009c55b795c386539403faf8c50497d734be03e86b514f6e1e8bd46fab0808", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4c009c55b795c386539403faf8c50497d734be03e86b514f6e1e8bd46fab0808", kill_on_drop: false }`
[INFO] [stdout] 4c009c55b795c386539403faf8c50497d734be03e86b514f6e1e8bd46fab0808
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 1805c479bc024bcef31f7cda0c0616309a65b8ca20e8fe4d1c844af6ff70eb38
[INFO] running `Command { std: "docker" "start" "-a" "1805c479bc024bcef31f7cda0c0616309a65b8ca20e8fe4d1c844af6ff70eb38", kill_on_drop: false }`
[INFO] [stderr] warning: fields `hbond_distance_threshold` and `hbond_energy_threshold` are never read
[INFO] [stderr]    --> src/lib.rs:166:5
[INFO] [stderr]     |
[INFO] [stderr] 165 | pub struct SecondaryStructureAssignment {
[INFO] [stderr]     |            ---------------------------- fields in this struct
[INFO] [stderr] 166 |     hbond_distance_threshold: f32, // in Å
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 167 |     hbond_energy_threshold: f32,   // in kcal/mol
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `pixelfold` (lib) generated 1 warning
[INFO] [stderr] warning: `pixelfold` (lib test) generated 1 warning (1 duplicate)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.31s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/pixelfold-d9bff10461ff4eb0)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test visualization::surface::tests::test_hydrophobicity_colors ... ok
[INFO] [stdout] test visualization::surface::tests::test_hydrophobicity_scale ... ok
[INFO] [stdout] test visualization::surface::tests::test_vdw_radii ... ok
[INFO] [stdout] test visualization::surface::tests::test_fibonacci_sphere_generation ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/pixelfold-8e77d74327ccb9e6)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests pixelfold
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "1805c479bc024bcef31f7cda0c0616309a65b8ca20e8fe4d1c844af6ff70eb38", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1805c479bc024bcef31f7cda0c0616309a65b8ca20e8fe4d1c844af6ff70eb38", kill_on_drop: false }`
[INFO] [stdout] 1805c479bc024bcef31f7cda0c0616309a65b8ca20e8fe4d1c844af6ff70eb38
